miRBase entry: gmo-mir-11200

Stem-loop gmo-mir-11200


Accession
MI0036251
Description
Gadus morhua gmo-mir-11200 precursor miRNA


Sequence

2923 reads, 115.0 reads per million, 20 experiments
CGUGCUGCGCUCAAGUUGCgccuugauucagugggcuUACCUGACGUUGCUGUGCA
.((((.(((((((.((...((((.........))))..)).))).).))).)))).

Structure
C    U   - -   A  UGC    uga 
 GUGC GCG C UCA GU   gccu   u
 |||| ||| | ||| ||   ||||   u
 CGUG CGU G AGU CA   cggg   c
A    U   U C   C  -Uu    uga 


Annotation confidence Medium
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Genome context
CAEA01436663.1: 5-60 [-]

Database links

Mature gmo-miR-11200-5p

Accession MIMAT0044363
Description Gadus morhua gmo-miR-11200-5p mature miRNA
Sequence 1 - CGUGCUGCGCUCAAGUUGC - 19
Evidence experimental
SOLiD [1]

Mature gmo-miR-11200-3p

Accession MIMAT0060475
Description Gadus morhua gmo-miR-11200-3p mature miRNA
Sequence 38 - UACCUGACGUUGCUGUGCA - 56
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305