Stem-loop gmo-mir-11206

Accession

MI0036257

Description

Gadus morhua gmo-mir-11206 precursor miRNA

Sequence

2575 reads, 40.0 reads per million, 19 experiments

UUCGGCGGCAGUCCGGCUGCUCcggcggagaaagggauuguacucccggagcugaGCUGCCGGGCUGCCGCCGAGUUc
(((((((((((((((((.((((.(((.......((((......))))...))))))).)))))))))))))))))...

Structure

---                 U    c   ggagaaa    uu 
   UUCGGCGGCAGUCCGGC GCUC ggc       ggga  g
   ||||||||||||||||| |||| |||       ||||   
   GAGCCGCCGUCGGGCCG CGag ucg       cccu  u
cUU                 U    -   ----agg    ca 

Annotation confidence High

Genome context

CAEA01540464.1: 1514-1591 [-]

Mature gmo-miR-11206-5p

• Accession: MIMAT0044370
• Description: Gadus morhua gmo-miR-11206-5p mature miRNA
• Sequence: 1 - UUCGGCGGCAGUCCGGCUGCUC - 22
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-11206-3p

• Accession: MIMAT0060477
• Description: Gadus morhua gmo-miR-11206-3p mature miRNA
• Sequence: 56 - GCUGCCGGGCUGCCGCCGAGUU - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305