miRBase entry: gmo-mir-11252

Stem-loop gmo-mir-11252


Accession
MI0036311
Description
Gadus morhua gmo-mir-11252 precursor miRNA


Sequence

102 reads, 2.0 reads per million, 19 experiments
AUCGUUUCGAGCCGCUCUAGUUacaugugaugcUAGAGGGUAACGAAACGACA
.((((((((.(((.(((((((..........))))))))))..))))))))..

Structure
-A        -A   G       Uaca 
  UCGUUUCG  GCC CUCUAGU    u
  ||||||||  ||| |||||||     
  AGCAAAGC  UGG GAGAUcg    g
AC        AA   -       uagu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
HE569118.1: 63533-63585 [-]

Database links

Mature gmo-miR-11252-5p

Accession MIMAT0044430
Description Gadus morhua gmo-miR-11252-5p mature miRNA
Sequence 1 - AUCGUUUCGAGCCGCUCUAGUU - 22
Evidence experimental
SOLiD [1]

Mature gmo-miR-11252-3p

Accession MIMAT0044431
Description Gadus morhua gmo-miR-11252-3p mature miRNA
Sequence 34 - UAGAGGGUAACGAAACGACA - 53
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305