miRBase entry: gmo-mir-11271

Stem-loop gmo-mir-11271


Accession
MI0036332
Description
Gadus morhua gmo-mir-11271 precursor miRNA


Sequence

2322 reads, 73.0 reads per million, 12 experiments
AACAAUUUUCGAUCUCUGUGUAuacagaucuucuuaCACACAUGUCGAAACUUGAU
..(((.(((((((...((((((............))))))...))))))).)))..

Structure
AA   U       CUC      uacag 
  CAA UUUCGAU   UGUGUA     a
  ||| |||||||   ||||||      
  GUU AAAGCUG   ACACau     u
UA   C       UAC      ucuuc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
HE571170.1: 1686698-1686753 [+]

Database links

Mature gmo-miR-11271-5p

Accession MIMAT0044456
Description Gadus morhua gmo-miR-11271-5p mature miRNA
Sequence 1 - AACAAUUUUCGAUCUCUGUGUA - 22
Evidence experimental
SOLiD [1]

Mature gmo-miR-11271-3p

Accession MIMAT0060486
Description Gadus morhua gmo-miR-11271-3p mature miRNA
Sequence 37 - CACACAUGUCGAAACUUGAU - 56
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305