Stem-loop gmo-mir-11275

Accession

MI0036336

Description

Gadus morhua gmo-mir-11275 precursor miRNA

Sequence

107 reads, 3.0 reads per million, 18 experiments

CCAGCCCCCGACCCAACAGCCagccgguccugcuggCUGUUGGGUCAGGGGCGGAGA
((.(((((.(((((((((((((((.......))))))))))))))).)))))))...

Structure

---  A     C               cg 
   CC GCCCC GACCCAACAGCCagc  g
   || ||||| |||||||||||||||  u
   GG CGGGG CUGGGUUGUCggucg  c
AGA  -     A               uc 

Annotation confidence High

Genome context

HE566601.1: 299319-299375 [-]

Mature gmo-miR-11275-5p

• Accession: MIMAT0044461
• Description: Gadus morhua gmo-miR-11275-5p mature miRNA
• Sequence: 1 - CCAGCCCCCGACCCAACAGCC - 21
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-11275-3p

• Accession: MIMAT0060487
• Description: Gadus morhua gmo-miR-11275-3p mature miRNA
• Sequence: 37 - CUGUUGGGUCAGGGGCGGAGA - 57
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305