Stem-loop fve-MIR11309

Accession

MI0036453

Description

Fragaria vesca fve-MIR11309 precursor miRNA

Sequence

961 reads, 92.0 reads per million, 18 experiments

gcacuacaaucaagaugUUUGUUUGGCAUGCAGUUGGCacuugguaacuaggguuaacauuuaaauaaaaauuaaauuugggagaaagaacuauaaucaggaugucuuaagcacgauuaauuuguuaggaaaguaaauaaacucgagccaugcagccaagugccaAUUGCAUGCUGAACGAACAUCuugauuguggaugc
(((((((((((((((((((((((((((((((((((((((((((((......((((...((((((.......)))))).(((.........)))...........(((((...((((.....))))))))).(((......)))..)))).....)))))))))))))))))))))))))))))))))))))))))).)))

Structure

   -                                          aacuag    aacauuuaaauaaaaauuaaauuugggagaaagaacuauaaucaggaug     agc    u 
gca cuacaaucaagaugUUUGUUUGGCAUGCAGUUGGCacuuggu      gguu                                                 ucuua   acga u
||| ||||||||||||||||||||||||||||||||||||||||||      ||||                                                 |||||   |||| a
cgu gguguuaguuCUACAAGCAAGUCGUACGUUAaccgugaaccg      ccga                                                 aggau   uguu a
   a                                          -acgua    ----------------------------------gcucaaauaaaugaa     ---    u 

Annotation confidence Medium

Genome context

LG0: 4870673-4870872 [+]

Mature fve-miR11309-5p

• Accession: MIMAT0044592
• Description: Fragaria vesca fve-miR11309-5p mature miRNA
• Sequence: 18 - UUUGUUUGGCAUGCAGUUGGC - 38
• Evidence: experimental ; Illumina [1]

Mature fve-miR11309-3p

• Accession: MIMAT0060577
• Description: Fragaria vesca fve-miR11309-3p mature miRNA
• Sequence: 166 - AUUGCAUGCUGAACGAACAUC - 186
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610