Stem-loop ppt-MIR11316

Accession

MI0036464

Description

Physcomitrella patens ppt-MIR11316 precursor miRNA

Sequence

cuugaauuauucgugUCUUUGAUUUCUGGACAUGUCcaugagacauucgcagauuuuuuacuccacaggacauguccaaaaaucagugacaugaauaauucaag
(((((((((((((((((.(((((((.(((((((((((..(((..................)))....))))))))))).))))))).)))))))))))))))))

Structure

                 U       C           --au   acauucgc 
cuugaauuauucgugUC UUGAUUU UGGACAUGUCc    gag        a
||||||||||||||||| ||||||| |||||||||||    |||         
gaacuuaauaaguacag gacuaaa accuguacagg    cuc        g
                 u       a           acac   auuuuuua 

Annotation confidence Not enough data

Genome context

Chr01: 25875159-25875262 [+]

Mature ppt-miR11316

• Accession: MIMAT0044603
• Description: Physcomitrella patens ppt-miR11316 mature miRNA
• Sequence: 16 - UCUUUGAUUUCUGGACAUGUC - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162