Stem-loop ppt-MIR11325

Accession

MI0036473

Description

Physcomitrella patens ppt-MIR11325 precursor miRNA

Sequence

uagcaaauuuaugauaugaaauaucuacuauguuuuugucaaguugauugauuuggcacaucuaagauugguugggugucuucuaacaucaauuuuagacaUGCCAAAAUCAAUCAACUCGACaaucauauuuauaucuuacuguua
(((((.......((((((((........((((...(((((.(((((((((((((((((..((((((((((((((((.....))))))..))))))))))..)))).))))))))))))).))))).))))))))))))....)))))

Structure

     aauuuau        auaucuac    uuu     a             -    ca          --      u 
uagca       gauaugaa        uaug   uuguc aguugauugauuu ggca  ucuaagauug  guuggg g
|||||       ||||||||        ||||   ||||| ||||||||||||| ||||  ||||||||||  |||||| u
auugu       cuauauuu        auac   aaCAG UCAACUAACUAAA CCGU  agauuuuaac  caaucu c
     ---cauu        --------    --u     C             A    ac          ua      u 

Annotation confidence Not enough data

Genome context

Chr14: 3915531-3915677 [+]

Mature ppt-miR11325

• Accession: MIMAT0044612
• Description: Physcomitrella patens ppt-miR11325 mature miRNA
• Sequence: 102 - UGCCAAAAUCAAUCAACUCGAC - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162