Stem-loop ppt-MIR11326

Accession

MI0036474

Description

Physcomitrella patens ppt-MIR11326 precursor miRNA

Sequence

cagagcccauuggacaggcauugcugcuggucuccggaucguuuuggaacccgacgcuugcguuggaaauccuucaagcucagcggccuugagaggaacgcuuugaaucugUCGGGAGAUCUGUCGCGAUGCcugacccuugaacucug
(((((..((..((.((((((((((.((.(((((((.(((.(.((((((..((((((....))))))...(((((((((((....)).))))).))))....)))))).).))).))))))).)).)))))))))).))..))..)))))

Structure

     cc  uu  a          u  u       g   c u      acccgacgcuugcguuggaaa    -     -  c 
cagag  ca  gg caggcauugc gc ggucucc gau g uuugga                     uccu ucaag cu a
|||||  ||  || |||||||||| || ||||||| ||| | ||||||                     |||| ||||| ||  
gucuc  gu  cc gucCGUAGCG UG CUAGAGG CUg c aaguuu                     agga aguuc gg g
     aa  uc  a          C  U       G   u u      -----------------cgca    g     c  c 

Annotation confidence Not enough data

Genome context

Chr14: 14350804-14350952 [+]

Mature ppt-miR11326

• Accession: MIMAT0044613
• Description: Physcomitrella patens ppt-miR11326 mature miRNA
• Sequence: 112 - UCGGGAGAUCUGUCGCGAUGC - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162