Stem-loop ppt-MIR11327

Accession

MI0036475

Description

Physcomitrella patens ppt-MIR11327 precursor miRNA

Sequence

auuuauuucaauuuuacaaccauaaagauaguuagguuacaauuauaaguuaccccagucaaacuauuccauuggcagaauuucaguuauccccuagagauuuucuuccaauggUAUAGAUUGACUGGGGUAACUuauaauuguaaccuaacuaucucuaugguuguaaaauugaaauaaau
((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((.((((.(((((((.((((..((..(........)..))..)))).))))))).)))).))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))

Structure

                        a                                     a    u       c    uu  ag uau 
auuuauuucaauuuuacaaccaua agauaguuagguuacaauuauaaguuaccccagucaa cuau ccauugg agaa  uc  u   c
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||  ||  |    
uaaauaaaguuaaaauguugguau ucuaucaauccaauguuaauauUCAAUGGGGUCAGUU GAUA gguaacc ucuu  ag  a   c
                        c                                     A    U       u    uu  ag ucc 

Annotation confidence Not enough data

Genome context

Chr15: 3178084-3178265 [-]

Mature ppt-miR11327

• Accession: MIMAT0044614
• Description: Physcomitrella patens ppt-miR11327 mature miRNA
• Sequence: 115 - UAUAGAUUGACUGGGGUAACU - 135
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162