Stem-loop ppt-MIR11329

Accession

MI0036477

Description

Physcomitrella patens ppt-MIR11329 precursor miRNA

Sequence

uugagcacaaguucaaccucaaagaucuccgucugcccucccuugcccacacccccacccccacccacuuccccgauuugugucggggcgagcagguggCGAUCUUUGAAGCUGAACUCAuguucga
(((((((..((((((.(.(((((((((...((..((........))..))..........(((((..((((((((((....))))))).)))..))))).))))))))).).))))))..)))))))

Structure

       ca      a c         uccgucugcccucccuugcccacacccccaccc     ca   -       u 
uugagca  aguuca c ucaaagauc                                 ccacc  cuu ccccgau u
|||||||  |||||| | |||||||||                                 |||||  ||| |||||||  
agcuugu  UCAAGU G AGUUUCUAG                                 ggugg  gag ggggcug g
       AC      C A         --------------------------------C     ac   c       u 

Annotation confidence Not enough data

Genome context

Chr19: 12265649-12265775 [-]

Mature ppt-miR11329

• Accession: MIMAT0044616
• Description: Physcomitrella patens ppt-miR11329 mature miRNA
• Sequence: 100 - CGAUCUUUGAAGCUGAACUCA - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162