Stem-loop ppt-MIR11330

Accession

MI0036478

Description

Physcomitrella patens ppt-MIR11330 precursor miRNA

Sequence

gaauauuguucuuaguaucccaacuguaaacccucuccucuggauuugcuaauaggagaagguuuacaGUUGGGAUAAAAAGAACAAUAuuu
(((((((((((((..(((((((((((((((((.((((((.(((.....)))..)))))).)))))))))))))))))..)))))))))))))

Structure

             ag                 c      -c   a 
gaauauuguucuu  uaucccaacuguaaacc ucuccu  ugg u
|||||||||||||  ||||||||||||||||| ||||||  ||| u
uuuAUAACAAGAA  AUAGGGUUGacauuugg agagga  auc u
             AA                 a      ua   g 

Annotation confidence Not enough data

Genome context

Chr23: 2735637-2735728 [-]

Mature ppt-miR11330

• Accession: MIMAT0044617
• Description: Physcomitrella patens ppt-miR11330 mature miRNA
• Sequence: 69 - GUUGGGAUAAAAAGAACAAUA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162