Stem-loop ppt-MIR1034b

Accession

MI0036480

Description

Physcomitrella patens ppt-MIR1034b precursor miRNA

Sequence

aaacaugaacaugcagagcguuucaaggcucauaacguccucauucuugcaagcacaacgcugccaaagucaugacccucuuccuuacagugacugcaaauagagauauucaUUACUUUGGCAGCGUUGUGCuugccggauugagucuuugagugauggcauacacugcauauucauguuu
(((((((((.((((((.(.((.(((..(((((.......((((.(((.((((((((((((((((((((((.((((..((((......(((...))).....))))....)))).)))))))))))))))))))))).))).))))....)))))..))).)).).)))))).)))))))))

Structure

         c      a c  u   ag     uaacguc    u   u                      c    --cc    uccuua   u 
aaacaugaa augcag g gu uca  gcuca       cuca ucu gcaagcacaacgcugccaaagu auga    cucu      cag  
||||||||| |||||| | || |||  |||||       |||| ||| |||||||||||||||||||||| ||||    ||||      ||| g
uuuguacuu uacguc c ua ggu  ugagu       gagu agg cguuCGUGUUGCGACGGUUUCA Uacu    gaga      guc  
         a      a a  c   ag     ---uucu    u   c                      U    uaua    -uaaac   a 

Annotation confidence Not enough data

Genome context

Chr17: 6852049-6852229 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1034b

Mature ppt-miR1034b

• Accession: MIMAT0044619
• Description: Physcomitrella patens ppt-miR1034b mature miRNA
• Sequence: 113 - UUACUUUGGCAGCGUUGUGC - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26209555
   Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
   "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
   "Plant Cell (2015) 27:2148-2162