miRBase entry: fhe-mir-2a

Stem-loop fhe-mir-2a


Accession
MI0037107
Description
Fasciola hepatica fhe-mir-2a precursor miRNA

Literature search
1 open access papers mention fhe-mir-2a
(1 sentences)

Sequence

cagucaauacuggcuggaggcaccguaagucuGUCACAGCCAGAAUUGAUGAACG
..((((((.(((((((..((((.........)))).))))))).)))))).....

Structure
---ca      a       ga    ccg 
     gucaau cuggcug  ggca   u
     |||||| |||||||  ||||   a
     UAGUUA GACCGAC  CUGu   a
GCAAG      A       -A    cug 


Annotation confidence Not enough data
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Genome context
scaffold879: 28178-28232 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from fhe-mir-2a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature fhe-miR-2a

Accession MIMAT0045205
Description Fasciola hepatica fhe-miR-2a mature miRNA
Sequence 33 - GUCACAGCCAGAAUUGAUGAACG - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26432296
    The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms
    "Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M"
    "Int J Parasitol (2015) 45:901-913