Stem-loop fhe-mir-2f

Accession

MI0037112

Description

Fasciola hepatica fhe-mir-2f precursor miRNA

Literature search

1 open access papers mention fhe-mir-2f
(1 sentences)

Sequence

agguaucgauucuggcugggauagcgaagaaacggguccacagcggaucaacacggcuuggcaccguucccagcgcgguuugccaccgucuuaccuGUCACAGCCAAUAUUGAUGCC
.(((((((((..((((((.(((((..((((....(((((.....)))))....(((..(((((((((.......)))))..)))))))))))..))))).))))))..)))))))))

Structure

a         uc      g     cg    aacggguccacagcggaucaaca   cu    --     uc 
 gguaucgau  uggcug gauag  aaga                       cgg  uggc  accgu  c
 |||||||||  |||||| |||||  ||||                       |||  ||||  |||||  c
 CCGUAGUUA  ACCGAC CUGuc  uucu                       gcc  accg  uggcg  a
-         UA      A     ca    -----------------------   --    uu     cg 

Annotation confidence Low

Genome context

scaffold278: 636130-636246 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from fhe-mir-2f

Mature fhe-miR-2f

• Accession: MIMAT0045210
• Description: Fasciola hepatica fhe-miR-2f mature miRNA
• Sequence: 97 - GUCACAGCCAAUAUUGAUGCC - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26432296
   The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms
   "Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M"
   "Int J Parasitol (2015) 45:901-913