Stem-loop pca-mir-9

Accession

MI0037572

Description

Polistes canadensis pca-mir-9 precursor miRNA

Sequence

agaucuuggugcggacauuuUCUUUGGUUAUCUAGCUGUAUGAguuuuguucgacaucAUAAAGCUAGAUUACCGGAGUUaagcuuaguagacuucuaaucuuauuaaga
...((((((((.(((..((..(((((((.((((((((.((((((((......))).))))).)))))))).)))))))..))..((((.......)))))))))))))))

Structure

aga        c   ---------------ca  uU       U        G     -   uu 
   ucuuggug gga                 uu  CUUUGGU AUCUAGCU UAUGA guu  g
   |||||||| |||                 ||  ||||||| |||||||| ||||| |||   
   agaauuau ucu                 aa  GAGGCCA UAGAUCGA AUAcu cag  u
---        -   aaucuucagaugauucg  UU       U        A     a   cu 

Annotation confidence Low

Genome context

Unknown

Mature pca-miR-9-5p

• Accession: MIMAT0045838
• Description: Polistes canadensis pca-miR-9-5p mature miRNA
• Sequence: 21 - UCUUUGGUUAUCUAGCUGUAUGA - 43
• Evidence: experimental ; Illumina [1]

Mature pca-miR-9-3p

• Accession: MIMAT0045839
• Description: Polistes canadensis pca-miR-9-3p mature miRNA
• Sequence: 59 - AUAAAGCUAGAUUACCGGAGUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26483466
   Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
   "Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, Gonzalez-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tar"
   "Proc Natl Acad Sci U S A (2015) 112:13970-13975