Stem-loop zma-MIR11970

Accession

MI0038158

Description

Zea mays zma-MIR11970 precursor miRNA

Literature search

1 open access papers mention zma-MIR11970
(1 sentences)

Sequence

260 reads, 936.0 reads per million, 38 experiments

agacaccgauggcuaugcaagcagugguucugugcaagcgugcaagcaaaccauuugauccauuagauuacgauuCAACCACAGAUACAACCAUGguuuguuaggagcuauuuuauaaagauuauugagcuagugguggaagaguuuaaguguuaaaugugauuuacggUUGGAUCACGAUCUAAUGGAuuagaugguuugguugcacguuugcacaaaaggacugcuugcauagcggucguugccu
...((.((((.((((((((((((((.....(((((((((((((((.(((((((((((((((((((((((..(((((((((..(((((((...(((((((.....)))))))........(((..(((((((..(.....)..)))))))..)))...))).))))..)))))))))..))))))))))))))))))))))).))))))))))))))).....)))))))))))))).)))).))...

Structure

aga  c    g              gguuc               g                       ac         AC    -   -------------------------------------------ACC       g 
   ca cgau gcuaugcaagcagu     ugugcaagcgugcaa caaaccauuugauccauuagauu  gauuCAACC  AGAU ACA                                              AUGguuu u
   || |||| ||||||||||||||     ||||||||||||||| |||||||||||||||||||||||  |||||||||  |||| |||                                              ||||||| u
   gu gcug cgauacguucguca     acacguuugcacguu guuugguagauuAGGUAAUCUAG  CUAGGUUgg  uuua ugu                                              uaucgag a
ucc  u    g              ggaaa               g                       CA         ca    g   aaauugugaauuugagaagguggugaucgaguuauuagaaauauuu       g 

Annotation confidence Low

Genome context

3: 211001245-211001491 [-]

Mature zma-miR11970-5p

• Accession: MIMAT0046334
• Description: Zea mays zma-miR11970-5p mature miRNA
• Sequence: 76 - CAACCACAGAUACAACCAUG - 95
• Evidence: experimental ; Illumina [1]

Mature zma-miR11970-3p

• Accession: MIMAT0046335
• Description: Zea mays zma-miR11970-3p mature miRNA
• Sequence: 170 - UUGGAUCACGAUCUAAUGGA - 189
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27313591
   Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis
   Dukowic-Schulze S, Sundararajan A, Ramaraj T, Kianian S, Pawlowski WP, Mudge J, Chen C
   Front Plant Sci (2016) 7:762