Stem-loop xla-let-7a

Accession

MI0038219

Description

Xenopus laevis xla-let-7a precursor miRNA

Literature search

2 open access papers mention xla-let-7a
(2 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUgaggauaacaccaaaggagauaaCUGUACAGCCUCCUAUCUUUCC
.(((((((.((((((((((((((.((......))........)))))))))))))).)))))))...

Structure

--U       U              -------a  au 
   GAGGUAG AGGUUGUAUAGUUg        gg  a
   ||||||| ||||||||||||||        ||   
   UUCUAUC UCCGACAUGUCaau        cc  a
CCU       C              agaggaaa  ac 

Annotation confidence Low

Genome context

chr7L: 113013226-113013292 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-let-7a

Mature xla-let-7a-5p

• Accession: MIMAT0046395
• Description: Xenopus laevis xla-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature xla-let-7a-3p

• Accession: MIMAT0046396
• Description: Xenopus laevis xla-let-7a-3p mature miRNA
• Sequence: 46 - CUGUACAGCCUCCUAUCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38