Stem-loop xla-mir-16a-1

Accession

MI0038265

Description

Xenopus laevis xla-mir-16a-1 precursor miRNA

Literature search

1 open access papers mention xla-mir-16a-1
(3 sentences)

Sequence

149161 reads, 5459.0 reads per million, 18 experiments

UAGCAGCACGUAAAUAUUGGgugguaugauauggagccccAGUGUUAUUGUGCUGCUUAA
.(((((((((..(((((((((.(.(.........).))))))))))..)))))))))...

Structure

--U         UA         u g aug 
   AGCAGCACG  AAUAUUGGg g u   a
   |||||||||  ||||||||| | |   u
   UCGUCGUGU  UUGUGAccc c a   a
AAU         UA         - g ggu 

Annotation confidence Not enough data

Genome context

chr5S: 96781497-96781556 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-16a-1

Mature xla-miR-16a-1-5p

• Accession: MIMAT0046478
• Description: Xenopus laevis xla-miR-16a-1-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGG - 20
• Evidence: experimental ; Illumina [1]

Mature xla-miR-16a-3p

• Accession: MIMAT0046479
• Description: Xenopus laevis xla-miR-16a-3p mature miRNA
• Sequence: 41 - AGUGUUAUUGUGCUGCUUAA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38