miRBase entry: xla-mir-27b

Stem-loop xla-mir-27b


Accession
MI0038312
Description
Xenopus laevis xla-mir-27b precursor miRNA

Literature search
1 open access papers mention xla-mir-27b
(1 sentences)

Sequence

CAGAGCUUAGCUGAUUGGUGAACAgugauugaucuccucuuugUUCACAGUGGCUAAGUUCUGCA
((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))..

Structure
--            G    G       u  uug 
  CAGAGCUUAGCU AUUG UGAACAg ga   a
  |||||||||||| |||| ||||||| ||   u
  GUCUUGAAUCGG UGAC ACUUguu cu   c
AC            -    -       u  ccu 


Annotation confidence Not enough data
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Genome context
chr1L: 125598599-125598663 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-27b-5p

Accession MIMAT0046560
Description Xenopus laevis xla-miR-27b-5p mature miRNA
Sequence 1 - CAGAGCUUAGCUGAUUGGUGAACA - 24
Evidence experimental
Illumina [1]

Mature xla-miR-27b-3p

Accession MIMAT0046561
Description Xenopus laevis xla-miR-27b-3p mature miRNA
Sequence 44 - UUCACAGUGGCUAAGUUCUGCA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38