Stem-loop xla-mir-27b-1

Accession

MI0038312

Description

Xenopus laevis xla-mir-27b-1 precursor miRNA

Literature search

2 open access papers mention xla-mir-27b-1
(2 sentences)

Sequence

1136464 reads, 35752.0 reads per million, 18 experiments

cAGAGCUUAGCUGAUUGGUGAACAGugauugaucuccucuuugUUCACAGUGGCUAAGUUCUGCA
((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))..

Structure

--            G    G       u  uug 
  cAGAGCUUAGCU AUUG UGAACAG ga   a
  |||||||||||| |||| ||||||| ||   u
  GUCUUGAAUCGG UGAC ACUUguu cu   c
AC            -    -       u  ccu 

Annotation confidence High

Genome context

chr1L: 125598599-125598663 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-27b-1

Mature xla-miR-27b-1-5p

• Accession: MIMAT0046560
• Description: Xenopus laevis xla-miR-27b-1-5p mature miRNA
• Sequence: 2 - AGAGCUUAGCUGAUUGGUGAACAG - 25
• Evidence: experimental ; Illumina [1]

Mature xla-miR-27b-1-3p

• Accession: MIMAT0046561
• Description: Xenopus laevis xla-miR-27b-1-3p mature miRNA
• Sequence: 44 - UUCACAGUGGCUAAGUUCUGCA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38