Stem-loop xla-mir-27b

Accession

MI0038312

Description

Xenopus laevis xla-mir-27b precursor miRNA

Literature search

1 open access papers mention xla-mir-27b
(1 sentences)

Sequence

CAGAGCUUAGCUGAUUGGUGAACAgugauugaucuccucuuugUUCACAGUGGCUAAGUUCUGCA
((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))..

Structure

--            G    G       u  uug 
  CAGAGCUUAGCU AUUG UGAACAg ga   a
  |||||||||||| |||| ||||||| ||   u
  GUCUUGAAUCGG UGAC ACUUguu cu   c
AC            -    -       u  ccu 

Annotation confidence Low

Genome context

chr1L: 125598599-125598663 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-27b

Mature xla-miR-27b-5p

• Accession: MIMAT0046560
• Description: Xenopus laevis xla-miR-27b-5p mature miRNA
• Sequence: 1 - CAGAGCUUAGCUGAUUGGUGAACA - 24
• Evidence: experimental ; Illumina [1]

Mature xla-miR-27b-3p

• Accession: MIMAT0046561
• Description: Xenopus laevis xla-miR-27b-3p mature miRNA
• Sequence: 44 - UUCACAGUGGCUAAGUUCUGCA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38