miRBase entry: xla-mir-429-2

Stem-loop xla-mir-429-2

Accession

MI0038334

Description

Xenopus laevis xla-mir-429-2 precursor miRNA

Sequence

GUCUUACCAGACAAGGUUAGAucuaguuacucucgucUAAUACUGUCUGGUAAUGCCGU
((.((((((((((..(((((((..((.....)).)))))))..)))))))))).))...

Structure

---  C          AG       cu  u 
   GU UUACCAGACA  GUUAGAu  ag u
   || ||||||||||  |||||||  || a
   CG AAUGGUCUGU  UAAUcug  uc c
UGC  U          CA       -c  u

Annotation confidence Not enough data

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Genome context

chr7S: 64719969-64720027 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xla-mir-429-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-429-5p

Accession	MIMAT0046601
Description	Xenopus laevis xla-miR-429-5p mature miRNA
Sequence	1 - GUCUUACCAGACAAGGUUAGA - 21
Evidence	experimental Illumina [1]

Mature xla-miR-429-3p

Accession	MIMAT0046602
Description	Xenopus laevis xla-miR-429-3p mature miRNA
Sequence	38 - UAAUACUGUCUGGUAAUGCCGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38