Stem-loop cpo-mir-15b

Accession

MI0038562

Description

Cavia porcellus cpo-mir-15b precursor miRNA

Literature search

1 open access papers mention cpo-mir-15b
(6 sentences)

Sequence

1961 reads, 1559.0 reads per million, 9 experiments

uAGCAGCACAUCAUGAUUUACAUacguuagucaagauGCGAAUCAUUAUAUGCUGCUCUa
.(((((((.((.(((((((.(((.(.........)))).))))))).)).)))))))...

Structure

--u       C  C       A   a guu 
   AGCAGCA AU AUGAUUU CAU c   a
   ||||||| || ||||||| ||| |   g
   UCGUCGU UA UACUAAG Gua g   u
aUC       A  U       C   - aac 

Annotation confidence High

Genome context

DS562863.1: 57379064-57379123 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-15b

Mature cpo-miR-15b-5p

• Accession: MIMAT0046851
• Description: Cavia porcellus cpo-miR-15b-5p mature miRNA
• Sequence: 2 - AGCAGCACAUCAUGAUUUACAU - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-15b-3p

• Accession: MIMAT0046852
• Description: Cavia porcellus cpo-miR-15b-3p mature miRNA
• Sequence: 38 - GCGAAUCAUUAUAUGCUGCUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344