Stem-loop cpo-mir-20a

Accession

MI0038571

Description

Cavia porcellus cpo-mir-20a precursor miRNA

Sequence

guagcacUAAAGUGCUUAUAGUGCAGGUAGuguucaguuaucuACUGCAUUAUGAGCACUUAAAGUacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure

    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAG    c
|||| |||  ||||||||||||||||| |||    a
cguc UGA  UUCACGAGUAUUACGUC Auc    g
    a   AA                 -   uauu 

Annotation confidence Not enough data

Genome context

DS562860.1: 32028964-32029034 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-20a

Mature cpo-miR-20a-5p

• Accession: MIMAT0046868
• Description: Cavia porcellus cpo-miR-20a-5p mature miRNA
• Sequence: 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-20a-3p

• Accession: MIMAT0046869
• Description: Cavia porcellus cpo-miR-20a-3p mature miRNA
• Sequence: 44 - ACUGCAUUAUGAGCACUUAAAGU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344