miRBase entry: cpo-mir-20a

Stem-loop cpo-mir-20a

Accession

MI0038571

Description

Cavia porcellus cpo-mir-20a precursor miRNA

Sequence

guagcacUAAAGUGCUUAUAGUGCAGGUAGuguucaguuaucuACUGCAUUAUGAGCACUUAAAGUacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure

    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAG    c
|||| |||  ||||||||||||||||| |||    a
cguc UGA  UUCACGAGUAUUACGUC Auc    g
    a   AA                 -   uauu

Annotation confidence Not enough data

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Genome context

DS562860.1: 32028964-32029034 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-20a-5p

Accession	MIMAT0046868
Description	Cavia porcellus cpo-miR-20a-5p mature miRNA
Sequence	8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
Evidence	experimental Illumina [1]

Mature cpo-miR-20a-3p

Accession	MIMAT0046869
Description	Cavia porcellus cpo-miR-20a-3p mature miRNA
Sequence	44 - ACUGCAUUAUGAGCACUUAAAGU - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344