Stem-loop cpo-mir-21

Accession

MI0038573

Description

Cavia porcellus cpo-mir-21 precursor miRNA

Literature search

17 open access papers mention cpo-mir-21
(56 sentences)

Sequence

114511 reads, 16232.0 reads per million, 9 experiments

UAGCUUAUCAGACUGAUGUUGACuguugaaucucauggCAACAGCAGUCGAUGGGCUGUc
(((((((((.(((((.(((((.((((.((...))))))))))).))))))))))))))..

Structure

--         A     A     A    u  a 
  UAGCUUAUC GACUG UGUUG Cugu ga  
  ||||||||| ||||| ||||| |||| || u
  GUCGGGUAG CUGAC ACAAC ggua cu  
cU         -     G     -    -  c 

Annotation confidence High

Genome context

DS562887.1: 7682937-7682996 [+]

Mature cpo-miR-21-5p

• Accession: MIMAT0046872
• Description: Cavia porcellus cpo-miR-21-5p mature miRNA
• Sequence: 1 - UAGCUUAUCAGACUGAUGUUGAC - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-21-3p

• Accession: MIMAT0046873
• Description: Cavia porcellus cpo-miR-21-3p mature miRNA
• Sequence: 39 - CAACAGCAGUCGAUGGGCUGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344