miRBase entry: cpo-mir-100

Stem-loop cpo-mir-100

Accession

MI0038612

Description

Cavia porcellus cpo-mir-100 precursor miRNA

Sequence

AACCCGUAGAUCCGAACUUGUGgugauuguccacaCAAGCUUGUGUCUACAGGUCUG
.(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...

Structure

--A   C      C   A      g  au 
   ACC GUAGAU CGA CUUGUG ug  u
   ||| |||||| ||| |||||| ||   
   UGG CAUCUG GUU GAACac ac  g
GUC   A      U   C      -  cu

Annotation confidence Not enough data

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Genome context

DS562874.1: 26131486-26131542 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-100-5p

Accession	MIMAT0046945
Description	Cavia porcellus cpo-miR-100-5p mature miRNA
Sequence	1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-100-3p

Accession	MIMAT0046946
Description	Cavia porcellus cpo-miR-100-3p mature miRNA
Sequence	36 - CAAGCUUGUGUCUACAGGUCUG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344