miRBase entry: cpo-mir-106a

Stem-loop cpo-mir-106a

Accession

MI0038618

Description

Cavia porcellus cpo-mir-106a precursor miRNA

Sequence

AAAAGUGCUUACAGUGCAGGUAGcuuuuuaagaucuACUGCAAUGCAAGCACUUCUUAC
..((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).....

Structure

---AA        A  G     G   c   u 
     AAGUGCUU CA UGCAG UAG uuu  
     |||||||| || ||||| ||| ||| u
     UUCACGAA GU ACGUC Auc aga  
CAUUC        C  A     -   u   a

Annotation confidence Not enough data

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Genome context

DS562983.1: 2513060-2513118 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-106a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-106a-5p

Accession	MIMAT0046955
Description	Cavia porcellus cpo-miR-106a-5p mature miRNA
Sequence	1 - AAAAGUGCUUACAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-106a-3p

Accession	MIMAT0046956
Description	Cavia porcellus cpo-miR-106a-3p mature miRNA
Sequence	37 - ACUGCAAUGCAAGCACUUCUUAC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344