Stem-loop cpo-mir-138-1

Accession

MI0038644

Description

Cavia porcellus cpo-mir-138-1 precursor miRNA

Sequence

1153 reads, 738.0 reads per million, 7 experiments

AGCUGGUGUUGUGAAUCAGGCCGUugcccaucagagaaCGGCUACUUCACAACACCAGGGu
..(((((((((((((...(((((((..(.....)..)))))))..)))))))))))))...

Structure

-AG             UCA       gc c 
   CUGGUGUUGUGAA   GGCCGUu  c a
   |||||||||||||   |||||||  | u
   GACCACAACACUU   UCGGCaa  g c
uGG             -CA       ga a 

Annotation confidence High

Genome context

DS562862.1: 45796470-45796530 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-138-1

Mature cpo-miR-138-5p

• Accession: MIMAT0046999
• Description: Cavia porcellus cpo-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCGU - 24
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-138-3p

• Accession: MIMAT0047000
• Description: Cavia porcellus cpo-miR-138-3p mature miRNA
• Sequence: 39 - CGGCUACUUCACAACACCAGGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344