Stem-loop cpo-mir-142

Accession

MI0038649

Description

Cavia porcellus cpo-mir-142 precursor miRNA

Literature search

3 open access papers mention cpo-mir-142
(5 sentences)

Sequence

6465 reads, 443.0 reads per million, 5 experiments

CAUAAAGUAGAAAGCACUACUaacagcacuggagggUGUAGUGUUUCCUACUUUAUGGA
((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))..

Structure

--          A         Uaa ag a 
  CAUAAAGUAG AAGCACUAC   c  c c
  |||||||||| |||||||||   |  |  
  GUAUUUCAUC UUUGUGAUG   g  g u
AG          C         -Ug ga g 

Annotation confidence Medium

Genome context

DS562908.1: 558172-558230 [+]

Mature cpo-miR-142-5p

• Accession: MIMAT0047008
• Description: Cavia porcellus cpo-miR-142-5p mature miRNA
• Sequence: 1 - CAUAAAGUAGAAAGCACUACU - 21
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-142-3p

• Accession: MIMAT0047009
• Description: Cavia porcellus cpo-miR-142-3p mature miRNA
• Sequence: 37 - UGUAGUGUUUCCUACUUUAUGGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344