Stem-loop cpo-mir-144

Accession

MI0038651

Description

Cavia porcellus cpo-mir-144 precursor miRNA

Literature search

3 open access papers mention cpo-mir-144
(5 sentences)

Sequence

3800 reads, 202.0 reads per million, 5 experiments

GGAUAUCAUCAUAUACUGUAAGUUugugaugagacacUACAGUAUAGAUGAUGUACUa
((((((((((.(((((((((.((((......))))..))))))))))))))))).)).

Structure

-  -        A         -A    gu 
 GG AUAUCAUC UAUACUGUA  GUUu  g
 || |||||||| |||||||||  ||||   
 UC UGUAGUAG AUAUGACAU  caga  a
a  A        -         ca    gu 

Annotation confidence High

Genome context

DS562887.1: 23622352-23622409 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-144

Mature cpo-miR-144-5p

• Accession: MIMAT0047012
• Description: Cavia porcellus cpo-miR-144-5p mature miRNA
• Sequence: 1 - GGAUAUCAUCAUAUACUGUAAGUU - 24
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-144-3p

• Accession: MIMAT0047013
• Description: Cavia porcellus cpo-miR-144-3p mature miRNA
• Sequence: 38 - UACAGUAUAGAUGAUGUACU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344