miRBase entry: cpo-mir-194

Stem-loop cpo-mir-194

Accession

MI0038683

Description

Cavia porcellus cpo-mir-194 precursor miRNA

Sequence

UGUAACAGCAACUCCAUGUGGAAgugcccacugguuCCAGUGGGGCUGCUGUUAUCUG
.(((((((((.((((((.((((...(((....))))))))))))).)))))))))...

Structure

--U         A      G    Agu   c 
   GUAACAGCA CUCCAU UGGA   gcc a
   ||||||||| |||||| ||||   |||  
   UAUUGUCGU GGGGUG ACCu   ugg c
GUC         C      -    ---   u

Annotation confidence Not enough data

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Genome context

DS562897.1: 5717423-5717480 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-194

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-194-5p

Accession	MIMAT0047074
Description	Cavia porcellus cpo-miR-194-5p mature miRNA
Sequence	1 - UGUAACAGCAACUCCAUGUGGAA - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-194-3p

Accession	MIMAT0047075
Description	Cavia porcellus cpo-miR-194-3p mature miRNA
Sequence	37 - CCAGUGGGGCUGCUGUUAUCUG - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344