miRBase entry: cpo-mir-216b

Stem-loop cpo-mir-216b

Accession

MI0038708

Description

Cavia porcellus cpo-mir-216b precursor miRNA

Sequence

AAAUCUCUGCAGGCAAAUGUGAugucacugaagaaucacACACUUACCUGUAAAGAUUCUG
.(((((.((((((.((.((((((.((......))))))))...)).)))))).)))))...

Structure

--A     C      C  --A      g  ac 
   AAUCU UGCAGG AA   UGUGAu uc  u
   ||||| |||||| ||   |||||| ||   
   UUAGA AUGUCC UU   Acacua ag  g
GUC     A      A  CAC      -  aa

Annotation confidence Not enough data

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Genome context

DS562903.1: 8638120-8638180 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-216b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-216b-5p

Accession	MIMAT0047121
Description	Cavia porcellus cpo-miR-216b-5p mature miRNA
Sequence	1 - AAAUCUCUGCAGGCAAAUGUGA - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-216b-3p

Accession	MIMAT0047122
Description	Cavia porcellus cpo-miR-216b-3p mature miRNA
Sequence	40 - ACACUUACCUGUAAAGAUUCUG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344