miRBase entry: cpo-mir-221

Stem-loop cpo-mir-221

Accession

MI0038713

Description

Cavia porcellus cpo-mir-221 precursor miRNA

Sequence

ACCUGGCAUACAAUGUAGAUUUCUGUguuuguugaacaacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))...

Structure

---        U         AUUU    -    g 
   ACCUGGCA ACAAUGUAG    CUGU guuu  
   |||||||| |||||||||    |||| |||| u
   UGGGUCGU UGUUACAUC    GAca caag  
CUU        C         ----    a    u

Annotation confidence Not enough data

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Genome context

DS562888.1: 12035274-12035336 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-221-5p

Accession	MIMAT0047130
Description	Cavia porcellus cpo-miR-221-5p mature miRNA
Sequence	1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
Evidence	experimental Illumina [1]

Mature cpo-miR-221-3p

Accession	MIMAT0047131
Description	Cavia porcellus cpo-miR-221-3p mature miRNA
Sequence	41 - AGCUACAUUGUCUGCUGGGUUUC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344