Stem-loop cpo-mir-381

Accession

MI0038761

Description

Cavia porcellus cpo-mir-381 precursor miRNA

Literature search

3 open access papers mention cpo-mir-381
(7 sentences)

Sequence

70781 reads, 1833.0 reads per million, 7 experiments

agCGAGGUUGCCCUUUGUAUAUUCGgcuuguugacacggaaUAUACAAGGGCAAGCUCUCUGU
((.(((.((((((((.((((((((.(..........).)))))))))))))))).))).))..

Structure

--  C   G        U        G cuug 
  ag GAG UUGCCCUU GUAUAUUC g    u
  || ||| |||||||| |||||||| |     
  UC CUC AACGGGAA CAUAUaag c    u
UG  U   G        -        g acag 

Annotation confidence High

Genome context

DS562966.1: 1099199-1099261 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from cpo-mir-381

Mature cpo-miR-381-5p

• Accession: MIMAT0047225
• Description: Cavia porcellus cpo-miR-381-5p mature miRNA
• Sequence: 3 - CGAGGUUGCCCUUUGUAUAUUCG - 25
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-381-3p

• Accession: MIMAT0047226
• Description: Cavia porcellus cpo-miR-381-3p mature miRNA
• Sequence: 42 - UAUACAAGGGCAAGCUCUCUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344