Stem-loop cpo-mir-892

Accession

MI0038764

Description

Cavia porcellus cpo-mir-892 precursor miRNA

Sequence

1941 reads, 22687.0 reads per million, 5 experiments

cacguccUAUUCAGAAUGGCCUUGGUCAUuuggauuauaugucACCAAGGUCUUUCUGAGUAGAauagg
......((((((((((.((((((((((((.........)))..))))))))).))))))))))......

Structure

cacguc          U         --   uug 
      cUAUUCAGAA GGCCUUGGU  CAU   g
      |||||||||| |||||||||  |||   a
      GAUGAGUCUU CUGGAACCA  gua   u
ggauaA          U         cu   uau 

Annotation confidence High

Genome context

DS562939.1: 3931986-3932054 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-892

Mature cpo-miR-892-5p

• Accession: MIMAT0047231
• Description: Cavia porcellus cpo-miR-892-5p mature miRNA
• Sequence: 8 - UAUUCAGAAUGGCCUUGGUCAU - 29
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-892-3p

• Accession: MIMAT0047232
• Description: Cavia porcellus cpo-miR-892-3p mature miRNA
• Sequence: 44 - ACCAAGGUCUUUCUGAGUAGA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344