miRBase entry: cpo-mir-450b

Stem-loop cpo-mir-450b

Accession

MI0038781

Description

Cavia porcellus cpo-mir-450b precursor miRNA

Sequence

UUUUGCAAUAUGUUCCUGAUAUguaauauauaaguauAUUGGGAACAUUUUGCAUCCAU
...(((((.((((((((((((((...........)))))))))))))).))))).....

Structure

--UUU     U              uaau 
     UGCAA AUGUUCCUGAUAUg    a
     ||||| ||||||||||||||    u
     ACGUU UACAAGGGUUAuau    a
UACCU     U              gaau

Annotation confidence Not enough data

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Genome context

DS562983.1: 2872948-2873006 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-450b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-450b-5p

Accession	MIMAT0047264
Description	Cavia porcellus cpo-miR-450b-5p mature miRNA
Sequence	1 - UUUUGCAAUAUGUUCCUGAUAU - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-450b-3p

Accession	MIMAT0047265
Description	Cavia porcellus cpo-miR-450b-3p mature miRNA
Sequence	38 - AUUGGGAACAUUUUGCAUCCAU - 59
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344