miRBase entry: cpo-mir-485

Stem-loop cpo-mir-485

Accession

MI0038787

Description

Cavia porcellus cpo-mir-485 precursor miRNA

Sequence

AGGGGCUGGCUGUGAUCAGUUUgauccaucaaagugaCUCAUACACGGCUGUCCUCUCU
.(((((.(((((((.(((.(((((....))))).)))......))))))))))))....

Structure

---A     U       -----A   G     u 
    GGGGC GGCUGUG      UCA UUUga c
    ||||| |||||||      ||| |||||  
    UCCUG UCGGCAC      agu aaacu c
UCUC     -       AUACUC   g     a

Annotation confidence Not enough data

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Genome context

DS562966.1: 1108140-1108198 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from cpo-mir-485

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-485-5p

Accession	MIMAT0047275
Description	Cavia porcellus cpo-miR-485-5p mature miRNA
Sequence	1 - AGGGGCUGGCUGUGAUCAGUUU - 22
Evidence	not_experimental

Mature cpo-miR-485-3p

Accession	MIMAT0047276
Description	Cavia porcellus cpo-miR-485-3p mature miRNA
Sequence	38 - CUCAUACACGGCUGUCCUCUCU - 59
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344