miRBase entry: cpo-mir-493

Stem-loop cpo-mir-493

Accession

MI0038793

Description

Cavia porcellus cpo-mir-493 precursor miRNA

Sequence

UUGUACAUAGUAGGCUUUCAUUcacucguguacuuauacggUGAGGGUCUACUGUGUGCCAGG
..(((((((((((((((((((.....(((((....))))))))))))))))))))))))....

Structure

--UU                   Ucacu     a 
    GUACAUAGUAGGCUUUCAU     cgugu c
    |||||||||||||||||||     |||||  
    CGUGUGUCAUCUGGGAGUg     gcaua u
GGAC                   -----     u

Annotation confidence Not enough data

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Genome context

DS562966.1: 942145-942207 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-493

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-493-5p

Accession	MIMAT0047287
Description	Cavia porcellus cpo-miR-493-5p mature miRNA
Sequence	1 - UUGUACAUAGUAGGCUUUCAUU - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-493-3p

Accession	MIMAT0047288
Description	Cavia porcellus cpo-miR-493-3p mature miRNA
Sequence	42 - UGAGGGUCUACUGUGUGCCAGG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344