miRBase entry: cpo-mir-500a

Stem-loop cpo-mir-500a

Accession

MI0038799

Description

Cavia porcellus cpo-mir-500a precursor miRNA

Sequence

UAAUCCUUGCUACCCGAGUGAGAGUgcugucucaaugcaAUGCAUCUGGGCAAGAGAAGGGUUCUG
.(((((((.((.((((.(((....(((.........)))...))).))))..))..)))))))...

Structure

--U       -G  -A    A   AGAG   ugu 
   AAUCCUU  CU  CCCG GUG    Ugc   c
   |||||||  ||  |||| |||    |||   u
   UUGGGAA  GA  GGGU UAC    acg   c
GUC       GA  AC    C   -GUA   uaa

Annotation confidence Not enough data

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Genome context

DS562987.1: 3008302-3008367 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cpo-mir-500a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-500a-5p

Accession	MIMAT0047299
Description	Cavia porcellus cpo-miR-500a-5p mature miRNA
Sequence	1 - UAAUCCUUGCUACCCGAGUGAGAGU - 25
Evidence	not_experimental

Mature cpo-miR-500a-3p

Accession	MIMAT0047300
Description	Cavia porcellus cpo-miR-500a-3p mature miRNA
Sequence	40 - AUGCAUCUGGGCAAGAGAAGGGUUCUG - 66
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344