Stem-loop cpo-mir-708

Accession

MI0038838

Description

Cavia porcellus cpo-mir-708 precursor miRNA

Sequence

14865 reads, 3723.0 reads per million, 5 experiments

AAGGAGCUUACAAUCUAGCUGGGgguagaugacuugcacaugaacaCAACUAGACUGUGAGCUUCUAGa
.(((((((((((.(((((.((...((..(((.......)))..)).)).))))).)))))))))))...

Structure

--A           A     C  GGg  ag   ac 
   AGGAGCUUACA UCUAG UG   gu  aug  u
   ||||||||||| ||||| ||   ||  |||  u
   UCUUCGAGUGU AGAUC AC   ca  uac  g
aGA           C     A  --a  ag   ac 

Annotation confidence High

Genome context

DS562895.1: 13990350-13990418 [+]

Mature cpo-miR-708-5p

• Accession: MIMAT0047377
• Description: Cavia porcellus cpo-miR-708-5p mature miRNA
• Sequence: 1 - AAGGAGCUUACAAUCUAGCUGGG - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-708-3p

• Accession: MIMAT0047378
• Description: Cavia porcellus cpo-miR-708-3p mature miRNA
• Sequence: 47 - CAACUAGACUGUGAGCUUCUAG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344