Stem-loop cpo-mir-12077

Accession

MI0038877

Description

Cavia porcellus cpo-mir-12077 precursor miRNA

Sequence

2297 reads, 27010.0 reads per million, 5 experiments

UGCUCAGAGUUGCGUCGGUUAcuuagaguauacgUAACUGAGGCCACUCUGGGUAGA
((((((((((.((.((((((((.((.....)).)))))))).)).))))))))))..

Structure

--          U  G        u  g 
  UGCUCAGAGU GC UCGGUUAc ua a
  |||||||||| || |||||||| || g
  AUGGGUCUCA CG AGUCAAUg au u
AG          C  G        c  a 

Annotation confidence High

Genome context

DS562939.1: 3933561-3933617 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-12077

Mature cpo-miR-12077-5p

• Accession: MIMAT0047455
• Description: Cavia porcellus cpo-miR-12077-5p mature miRNA
• Sequence: 1 - UGCUCAGAGUUGCGUCGGUUA - 21
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-12077-3p

• Accession: MIMAT0047456
• Description: Cavia porcellus cpo-miR-12077-3p mature miRNA
• Sequence: 35 - UAACUGAGGCCACUCUGGGUAGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344