miRBase entry: dno-mir-539

Stem-loop dno-mir-539

Accession

MI0039149

Description

Dasypus novemcinctus dno-mir-539 precursor miRNA

Sequence

GGAGAAAUUAUCCUUGGUGUGUUcgcuuuauuuaugaugaauCAUACAAGGACAAUUUCUUUUU
.((((((((.((((((.(((((((((.........).)))).)))))))))).))))))))...

Structure

--G        A      G    -    - uuu 
   GAGAAAUU UCCUUG UGUG UUcg c   a
   |||||||| |||||| |||| |||| |   u
   UUCUUUAA AGGAAC AUAC aagu g   u
UUU        C      -    u    a uau

Annotation confidence Not enough data

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Genome context

JH578221.1: 147994-148057 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from dno-mir-539

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dno-miR-539-5p

Accession	MIMAT0047965
Description	Dasypus novemcinctus dno-miR-539-5p mature miRNA
Sequence	1 - GGAGAAAUUAUCCUUGGUGUGUU - 23
Evidence	experimental Illumina [1]

Mature dno-miR-539-3p

Accession	MIMAT0047966
Description	Dasypus novemcinctus dno-miR-539-3p mature miRNA
Sequence	43 - CAUACAAGGACAAUUUCUUUUU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344