miRBase entry: dno-mir-542

Stem-loop dno-mir-542

Accession

MI0039151

Description

Dasypus novemcinctus dno-mir-542 precursor miRNA

Sequence

UCGGGGAUCAUCAUGUCACGAGauacccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((.....)))..)))))))))...))))..))))..

Structure

--    GG    UCA         -a   c 
  UCGG  AUCA   UGUCACGAG  uac c
  ||||  ||||   |||||||||  ||| a
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u

Annotation confidence Not enough data

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Genome context

JH573198.1: 468016-468075 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from dno-mir-542

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dno-miR-542-5p

Accession	MIMAT0047969
Description	Dasypus novemcinctus dno-miR-542-5p mature miRNA
Sequence	1 - UCGGGGAUCAUCAUGUCACGAG - 22
Evidence	experimental Illumina [1]

Mature dno-miR-542-3p

Accession	MIMAT0047970
Description	Dasypus novemcinctus dno-miR-542-3p mature miRNA
Sequence	39 - UGUGACAGAUUGAUAACUGAAA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344