Stem-loop dno-mir-542

Accession

MI0039151

Description

Dasypus novemcinctus dno-mir-542 precursor miRNA

Sequence

11227 reads, 644.0 reads per million, 1 experiments

UCGGGGAUCAUCAUGUCACGAGAUacccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((.....)))..)))))))))...))))..))))..

Structure

--    GG    UCA         -A   c 
  UCGG  AUCA   UGUCACGAG  Uac c
  ||||  ||||   |||||||||  ||| a
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u 

Annotation confidence High

Genome context

JH573198.1: 468016-468075 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from dno-mir-542

Mature dno-miR-542-5p

• Accession: MIMAT0047969
• Description: Dasypus novemcinctus dno-miR-542-5p mature miRNA
• Sequence: 1 - UCGGGGAUCAUCAUGUCACGAGAU - 24
• Evidence: experimental ; Illumina [1]

Mature dno-miR-542-3p

• Accession: MIMAT0047970
• Description: Dasypus novemcinctus dno-miR-542-3p mature miRNA
• Sequence: 39 - UGUGACAGAUUGAUAACUGAAA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344