Stem-loop ocu-let-7d

Accession

MI0039210

Description

Oryctolagus cuniculus ocu-let-7d precursor miRNA

Literature search

71 open access papers mention ocu-let-7d
(354 sentences)

Sequence

719572 reads, 1880.0 reads per million, 36 experiments

AGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCU
.((((((((((((((.((((((...((((((.....))))))..........)))))).))))))))))))))...

Structure

--A              C      -------uua      g 
   GAGGUAGUAGGUUG AUAGUU          gggcag g
   |||||||||||||| ||||||          |||||| a
   UUCCGUCGUCCAGC UAUCaa          cccguu u
UCU              A      uggaggaaca      u 

Annotation confidence High

Genome context

CM000790.1: 71566522-71566597 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-let-7d

Mature ocu-let-7d-5p

• Accession: MIMAT0048082
• Description: Oryctolagus cuniculus ocu-let-7d-5p mature miRNA
• Sequence: 1 - AGAGGUAGUAGGUUGCAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-let-7d-3p

• Accession: MIMAT0048083
• Description: Oryctolagus cuniculus ocu-let-7d-3p mature miRNA
• Sequence: 55 - CUAUACGACCUGCUGCCUUUCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344