Stem-loop ocu-let-7f-1

Accession

MI0039211

Description

Oryctolagus cuniculus ocu-let-7f-1 precursor miRNA

Literature search

2 open access papers mention ocu-let-7f-1
(10 sentences)

Sequence

UGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCC
.((((((((((((((((((((((((((((((.....))))))).........)))))))))))))))))))))))...

Structure

--U                       ---------       u 
   GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
   |||||||||||||||||||||||         ||||||| a
   UUCCGUUAUCUAACAUAUCaaua         ucccauu u
CCC                       gaggacuug       u 

Annotation confidence Not enough data

Genome context

CM000790.1: 71564253-71564330 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-let-7f-1

Mature ocu-let-7f-5p

• Accession: MIMAT0048084
• Description: Oryctolagus cuniculus ocu-let-7f-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGAUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-let-7f-3p

• Accession: MIMAT0048085
• Description: Oryctolagus cuniculus ocu-let-7f-3p mature miRNA
• Sequence: 57 - CUAUACAAUCUAUUGCCUUCCC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344