miRBase entry: ocu-mir-20a

Stem-loop ocu-mir-20a

Accession

MI0039231

Description

Oryctolagus cuniculus ocu-mir-20a precursor miRNA

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUAAAGU
..(((((((((((((((((.(((...........)))))))))))))))))))).....

Structure

---UA                 G   uguu 
     AAGUGCUUAUAGUGCAG UAG    u
     ||||||||||||||||| |||    a
     UUCACGAGUAUUACGUC Auc    g
UGAAA                 -   uauu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM000797.1: 93068174-93068232 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ocu-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-20a-5p

Accession	MIMAT0048120
Description	Oryctolagus cuniculus ocu-miR-20a-5p mature miRNA
Sequence	1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-20a-3p

Accession	MIMAT0048121
Description	Oryctolagus cuniculus ocu-miR-20a-3p mature miRNA
Sequence	37 - ACUGCAUUAUGAGCACUUAAAGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344