miRBase entry: ocu-mir-20b

Stem-loop ocu-mir-20b

Accession

MI0039232

Description

Oryctolagus cuniculus ocu-mir-20b precursor miRNA

Sequence

CAAAGUGCUCAUAGUGCAGGUAGUucuagcaucauucUACUGUAGUGUGAGCACUUCUAG
..(((((((((((.(((((.(((.............)))))))).)))))))))))....

Structure

--CA           G     G   Uucua 
    AAGUGCUCAUA UGCAG UAG     g
    ||||||||||| ||||| |||     c
    UUCACGAGUGU AUGUC AUc     a
GAUC           G     -   uuacu

Annotation confidence Not enough data

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Genome context

CM000811.1: 108518633-108518692 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ocu-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-20b-5p

Accession	MIMAT0048122
Description	Oryctolagus cuniculus ocu-miR-20b-5p mature miRNA
Sequence	1 - CAAAGUGCUCAUAGUGCAGGUAGU - 24
Evidence	experimental Illumina [1]

Mature ocu-miR-20b-3p

Accession	MIMAT0048123
Description	Oryctolagus cuniculus ocu-miR-20b-3p mature miRNA
Sequence	38 - UACUGUAGUGUGAGCACUUCUAG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344