Stem-loop ocu-mir-20b

Accession

MI0039232

Description

Oryctolagus cuniculus ocu-mir-20b precursor miRNA

Literature search

36 open access papers mention ocu-mir-20b
(136 sentences)

Sequence

3421 reads, 26.0 reads per million, 36 experiments

CAAAGUGCUCAUAGUGCAGGUAGuucuagcaucauucuACUGUAGUGUGAGCACUUCUAG
..(((((((((((.(((((.(((.............)))))))).)))))))))))....

Structure

--CA           G     G   uucua 
    AAGUGCUCAUA UGCAG UAG     g
    ||||||||||| ||||| |||     c
    UUCACGAGUGU AUGUC Auc     a
GAUC           G     -   uuacu 

Annotation confidence High

Genome context

CM000811.1: 108518633-108518692 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ocu-mir-20b

Mature ocu-miR-20b-5p

• Accession: MIMAT0048122
• Description: Oryctolagus cuniculus ocu-miR-20b-5p mature miRNA
• Sequence: 1 - CAAAGUGCUCAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-20b-3p

• Accession: MIMAT0048123
• Description: Oryctolagus cuniculus ocu-miR-20b-3p mature miRNA
• Sequence: 39 - ACUGUAGUGUGAGCACUUCUAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344