Stem-loop ocu-mir-28

Accession

MI0039242

Description

Oryctolagus cuniculus ocu-mir-28 precursor miRNA

Literature search

17 open access papers mention ocu-mir-28
(81 sentences)

Sequence

312981 reads, 1288.0 reads per million, 36 experiments

AAGGAGCUCACAGUCUAUUGAGuugccauucugacuucccCACUAGAUUAUGAGCUCCUGGA
.(((((((((.((((((.((((((........))))....)).)))))).)))))))))...

Structure

--A         C      U  ----    gcc 
   AGGAGCUCA AGUCUA UG    AGuu   a
   ||||||||| |||||| ||    ||||    
   UCCUCGAGU UUAGAU AC    ucag   u
AGG         A      C  cccu    ucu 

Annotation confidence High

Genome context

CM000803.1: 84299170-84299231 [+]

Mature ocu-miR-28-5p

• Accession: MIMAT0048141
• Description: Oryctolagus cuniculus ocu-miR-28-5p mature miRNA
• Sequence: 1 - AAGGAGCUCACAGUCUAUUGAG - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-28-3p

• Accession: MIMAT0048142
• Description: Oryctolagus cuniculus ocu-miR-28-3p mature miRNA
• Sequence: 41 - CACUAGAUUAUGAGCUCCUGGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344