Stem-loop ocu-mir-29b-2

Accession

MI0039245

Description

Oryctolagus cuniculus ocu-mir-29b-2 precursor miRNA

Literature search

11 open access papers mention ocu-mir-29b-2
(20 sentences)

Sequence

500376 reads, 1011.0 reads per million, 36 experiments

CUGGUUUCACAUGGUGGCUUAGAUuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGUU
(((((((((.((((((.((.((((..............)))))))))))).)))))))))....

Structure

----         C      G  U    uuuucc 
    CUGGUUUCA AUGGUG CU AGAU      a
    ||||||||| |||||| || ||||       
    GACUAAAGU UACCAC GA Ucua      u
UUGU         U      -  -    uguuuc 

Annotation confidence High

Genome context

CM000805.1: 64849792-64849855 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-29b-2

Mature ocu-miR-29b-2-5p

• Accession: MIMAT0048147
• Description: Oryctolagus cuniculus ocu-miR-29b-2-5p mature miRNA
• Sequence: 1 - CUGGUUUCACAUGGUGGCUUAGAU - 24
• Evidence: not_experimental

Mature ocu-miR-29b-3p

• Accession: MIMAT0048146
• Description: Oryctolagus cuniculus ocu-miR-29b-3p mature miRNA
• Sequence: 42 - UAGCACCAUUUGAAAUCAGUGUU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344