miRBase entry: ocu-mir-29c

Stem-loop ocu-mir-29c

Accession

MI0039246

Description

Oryctolagus cuniculus ocu-mir-29c precursor miRNA

Literature search

2 open access papers mention ocu-mir-29c
(2 sentences)

Sequence

ACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUA
(((((((((...(((((((.(((...........))))))))))...)))))))))..

Structure

--         UCC       C   gucu 
  ACCGAUUUC   UGGUGUU AGA    g
  |||||||||   ||||||| |||    u
  UGGCUAAAG   ACCACGA Ucu    u
AU         UUU       -   guuu

Annotation confidence Not enough data

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Genome context

CM000805.1: 64850350-64850407 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-29c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-29c-5p

Accession	MIMAT0048148
Description	Oryctolagus cuniculus ocu-miR-29c-5p mature miRNA
Sequence	1 - ACCGAUUUCUCCUGGUGUUCAGA - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-29c-3p

Accession	MIMAT0048149
Description	Oryctolagus cuniculus ocu-miR-29c-3p mature miRNA
Sequence	37 - UAGCACCAUUUGAAAUCGGUUA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344