Stem-loop ocu-mir-93

Accession

MI0039261

Description

Oryctolagus cuniculus ocu-mir-93 precursor miRNA

Literature search

86 open access papers mention ocu-mir-93
(544 sentences)

Sequence

635567 reads, 2418.0 reads per million, 36 experiments

CAAAGUGCUGUUCGUGCAGGUAGugugauuaccugaccuACUGCUGAGCUAGCACUUCCCGA
..((((((((((((.((((.(((.((.(.....).)))))))))))))).))))))).....

Structure

---CA       -     U    G   u  g u 
     AAGUGCU GUUCG GCAG UAG gu a u
     ||||||| ||||| |||| ||| || | a
     UUCACGA CGAGU CGUC Auc ca u c
AGCCC       U     -    -   -  g c 

Annotation confidence High

Genome context

GL018760.1: 102971-103032 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-93

Mature ocu-miR-93-5p

• Accession: MIMAT0048176
• Description: Oryctolagus cuniculus ocu-miR-93-5p mature miRNA
• Sequence: 1 - CAAAGUGCUGUUCGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-93-3p

• Accession: MIMAT0048177
• Description: Oryctolagus cuniculus ocu-miR-93-3p mature miRNA
• Sequence: 40 - ACUGCUGAGCUAGCACUUCCCGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344